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Will a zygomycete help solve our energy woes?

I found the headline today, “Biofuels: Fungus Use Improves Corn-to-ethanol Process” and I was curious to find out what fungus they were talking about in the article. It turns out that researchers at Iowa State University found that Rhizopus microsporus is able to grow off part of the leftovers of ethanol production called thin stillage. [...]

Microbial Ecology in Science

Science has a section dedicated to Microbial Ecology including a review describing microbial biogeography studying communities on the basis of trait rather than taxonomic diversity. Certainly this interlinks with metagenomic approaches well, something I’ve been thinking about more after visiting some of the folks at Montana State Thermal Biology Institute and all the increasingly massive datasets [...]

Chlamy genome investigations

Chlamy coverThis month’s Genetics has a series of articles exploring the genome (published last year & freely available at Science) of the green algae [[Chlamydomonas reinhardtii]]. These manuscripts are primarily genome analyses making for a very bioinformatics focused issue of Genetics. Some of the highlights [...]

Invasion of not so tasty truffles.

(Truffle picture from BBC.com)

The BBC (link) has an interesting article about a  Chinese Black truffle being found as an invasive species in Italy. The Italian’s and European truffle aficionados are worried that the Chinese Black Truffle will outcompete the Perigord Black truffle, which is supposed to be very tasty and the second most expensive truffle by weight, behind only the Piedmont White [...]

Trichoderma reesei genome paper published

TrichodermaThe [[Trichoderma reesei]] genome paper was recently published in Nature Biotechnology from Diego Martinez at [[LANL]] with collaborators at [[JGI]], [[LBNL]], and others. This fungus was chosen for sequencing because it was found on canvas tents eating the cotton material suggesting it may be a good candidate for degrading cellulose plant material as part of cellulosic ethanol [...]

Will mushrooms save the world?

Paul Stamets thinks so and he’s done work to make this happen.  The founder of FungiPerfecti and author many books on mushroom cultivation spoke at a TED talk recently that is worth taking a [...]

Podospora genome published

P.anserinaThe genome of Podospora anserina S mat+ strain was sequenced by Genoscope and CNRS and published recently in Genome Biology. The genome sequence data has been available for several years, but it is great to see a publication describing the findings.  The 10X genome assembly with ~10,000 genes provides an important dataset for [...]

Fungal remediation of contaminated war zones

Depleted uranium (DU) from spent ammunition used in the conflicts in Iraq and the Balkans poses a health risk to the inhabitants of those regions. This paper in Current Biology from Marina Fomina et al shows that several species of fungi including one from the mycorrhizal genus [...]

Platypus genome

Neil has a great summary of the results from the Platypus genome sequencing project.

Deep EST sequencing = RNA-Seq

The transcriptional landscape of yeast has been (further) defined with [[Solexa]] sequencing in a method deemed “RNA-Seq”, but what I would call “deep EST sequencing”.  This approach for transcriptional profiling by sequencing alone is sure to be used by many labs looking for lower and more complete ways to describe and quantitate the full population of transcripts in an [...]