|
|
By Jason Stajich, on July 11th, 2010
I am excited to announce the publication of another mushroom genome this week. The mushroom Schizophyllum commune is an important model system for mushroom biology, development of genome was sequenced as part of efforts at the Joint Genome Institute and a collection of international researchers. The data and analyses from these efforts are presented in a publication [...]
By Jason Stajich, on June 29th, 2010
I’ll indulge a bit here to happily to point to the cover of this week’s PNAS with an image of Coprinopsis cinerea mushrooms fruiting referring to our article on the genome sequence of this important model fungus. You should also enjoy the commentary article from John Taylor and Chris Ellison that provides a summary of some [...]
By Jason Stajich, on June 17th, 2010
Francis Martin has written up a delightful summary pointing to our publication of the genome of Coprinopsis cinereus which appears in the early edition of PNAS and will grace the cover at the end of the month. I encourage you to take a look at Francis’s post and the paper, available as Open Access from PNAS. [...]
By Jason Stajich, on January 25th, 2010
The cover of the Jan/Feb Mycologia has a picture of a pretty weird place to find a mushroom growing – a new species of mushroom that was found fruiting underwater in the Rogue river in Oregon. This was reported about two years ago for a discovery that was made in 2005, but this is a formal [...]
By Jason Stajich, on January 12th, 2010
These papers got lost in my drafts of things to write about. Grants and overdue manuscripts are keeping me away from the blog.
Published work from Gary Foster’s lab in Applied Env Micro show progress on genetic engineering tools to express introduced genes in the basidiomycete mushroom system Clitopilus passeckerianus. C. passeckarianus produces an antibiotic, pleuromutilin, an important [...]
By Jason Stajich, on March 16th, 2009
In preparation for Asilomar, JGI is releasing lots of the genome sequencing project portals. The Schizophyllum commune Genome Portal is now publicly available. Go get your white-rot gene investigation on! (Though please respect the community rules for 1st rights to publication of the genome-wide analyses). [...]
By Jason Stajich, on January 21st, 2009
The Broad Institute in collaboration with many of the Coprinopsis cinereus (Coprinus cinerea) community of researchers have updated the genome annotation for C. cinereus with additional gene calls based on ESTs and improved gene callers. The annotation was made on the 13 chromosome assembly produced by work by SEMO fungal biology group and collaborators across the [...]
By Jason Stajich, on September 26th, 2008
Mike Challen asks for anyone with Agaricus bisporus ESTs, BAC data, or mapping information to send them in the direction of the JGI to aid in the assembly and annotation of this [...]
By balaji, on March 6th, 2008
Today, I would like to share the news about the publication of the Laccaria bicolor genome. This is the first mycorrhizal symbiotic genome published in the Nature journal. The title is “The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis”.
The team consisteing of more than 60 researchers from 16 institutions have revealed the interaction between plant and fungi.
For complete publication and additional [...]
By Jason Stajich, on December 10th, 2007
Dave Hibbett wrote a great article for Mycological Research that describes the current state of systematics and evolutionary studies of morphology in mushroom-forming Agaricomycete fungi. His article, dedicated to the late, great mycologist Orson K Miller, Jr and entitled “After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century” describes the how classification and systematics has changed in the last two hundred years and macromorphology to the more than “108,000 nucleotide sequences of ‘homobasidiomycetes’, filed under 7300 unique names.”
The article contains some beautiful pictures many of which are taken from some of the eminent mycological photographers and mycologists Michael Wood and Taylor Lockwood.
[...]
|
|