Category Archives: postdoc

Postdoc: Insect-Fungus Symbiosis (University of Florida)

Postdoc: Insect-Fungus Symbiosis

Do you have experience with any of the following:

  • diversity and genetics of fungi
  • high-throughput marker-based community surveys
  • next-gen sequencing library preparation

Do you want to work in one of the best-to-live-in towns in America?

Join our growing Symbiology team at the University of Florida to study the Ambrosia Symbiosis: beetles that farm fungus gardens to kill and digest trees. www.ambrosiasymbiosis.org

Please send your CV to Jiri Hulcr, hulcr@ufl.edu
Application deadline: December 10, 2013

Jiri Hulcr, Assistant Professor
University of Florida | School of Forest Resources and Conservation www.ambrosiasymbiosis.org

Postdoc: Unculturable Protists & Fungi, Single Cell Genomics

Two postdoctoral research positions are available in the laboratory of Dr. Thomas Richards at the University of Exeter, UK.

The project focuses on using environmental sequence data, including meta- genomics and transcriptomics, combined with single cell genomic data to investigate the biology and evolutionary significance of unculturable protist and fungal microbes from marine environments including deep-sea sediments.

One post is focused entirely on bioinformatic based analysis while the second post can include both bioinformatic and laboratory work. However, both applicants should be interested in working with second-generation sequence datasets and feel confident with post genomic analysis including for example: phylogenetic tree reconstruction and metabolic pathway reconstruction.

For more details please see:

https://jobs.exeter.ac.uk/hrpr_webrecruitment/wrd/run/ETREC107GF.open?VACANCY_ID=7490968mXd&WVID=3817591jNg&LANG=USA

https://jobs.exeter.ac.uk/hrpr_webrecruitment/wrd/run/ETREC107GF.open?VACANCY_ID=7733318mXd&WVID=3817591jNg&LANG=USA

This is a Gordon and Betty Moore Foundation funded project and is part of an international collaboration including associated laboratories at the University of British Colombia, University of Maryland Center for Environmental Science, Monterey Bay Aquarium Research Institute and the Department of Energy Joint Genome Institute and should include the opportunity for travel

To ask questions or apply please e-mail your CV and contact information for three referees to t.a.richards@exeter.ac.uk . Materials must be received by the 13th November but late applications will be considered until the position is filled.

Postdoc: Life strategies in the Archaeorhizomycetes soil fungi

Post doc, Life strategies in the Archaeorhizomycetes at Uppsala University

The Archaeorhizomycetes is an ancient class of ubiquitous soil fungi. Sequences representing the class have been identified from vegetated terrestrial habitats across the globe. Estimates indicate that there are hundreds of species within the class and strong patterns of habitat specificity has been documented among species. Yet the ecological role of the Archaeorhizomycetes remain unknown.

Deadline for application is March 15, 2013.

For more information contact Anna Rosling (anna.rosling@ebc.uu.se) and visit the Rosling Lab website

postdoc and PhD positions in Fungal evolution at Uppsala University

Two positions at Uppsala University in Hanna Johannesson’s lab at Uppsala University in Sweden are available. One is a PhD student position and one for a Postdoc working on experimental biology and using next generation sequencing techniques to address evolutionary questions.  Please see the ads linked for more information on applying for these positions.

Postdoc: Colletotrichum genomics

via Jo Anne Crouch

Post-Doctoral Research Position, Colletotrichum genomics

We are seeking applications for a Post-Doctoral Researcher to study transcriptome and genome evolution of five closely related species of Colletotrichum fungi impacting the health and productivity of grasses used for bioenergy, food, and turfgrass.  The incumbent will: (1) Develop and test hypotheses related to infection and cellulolytic degradation of host tissue by diverse Colletotrichum strains, (2) Take the lead on performing inoculations of grasses with these pathogens for RNA-Seq analysis from the host/pathogen interaction, and (3) Contribute to a larger collaborative Colletotrichum genome sequencing initiative.

Using genomic and transcriptomic (RNA-Seq) resources provided through a grant from the DOE/Joint Genome Institute (JGI), we seek to understand the molecular basis of host specialization, pathogenicity, cellulosic biomass degradation and other traits that characterize this diverse, yet closely related group of grass pathogens.  Fully assembled genomic datasets will soon be available for 20 Colletotrichum isolates and mapped transcriptomes for 14 of these isolates.  Data analysis will be facilitated through inclusion in the JGI MycoCosm Fungal Genome pipeline.

The incumbent will work under the joint direction of Dr. Bruce Clarke, Rutgers University, Dept. of Plant Biology & Pathology, and Dr. Jo Anne Crouch, USDA-ARS.  The position will be physically located at the Rutgers University’s Cook Campus in New Brunswick, NJ.

Qualifications

A Ph.D. in plant pathology, microbiology, mycology or a closely related field is required.  Candidates should be proficient in working with large datasets, and must have strong analytical, statistical and writing skills.  Candidates with experience working with fungi and/or plant pathogenic microorganisms, or any of the following areas are especially encouraged to apply: next-generation sequencing datasets; comparative genomics using Galaxy tools; experience analyzing RNA-Seq data; population and evolutionary genetics; phylogenetics.  Skills in bioinformatics (python, perl, R, etc) are desirable.

Terms of Appointment

Starting salary is $37,000 – $45,000 depending on experience, plus Rutgers University benefits.  Funds are guaranteed for one year, and renewable for a second year pending satisfactory research progress and availability of funds.

Review of applications will begin January 23, 2013, and continue until a suitable candidate is found.

Applications should be sent to:

Bruce Clarke (clarke@aesop.rutgers.edu) and Jo Anne Crouch (joanne.crouch@ars.usda.gov) and must include: (1) a cover letter containing a brief description of research interests and career goals, (2) curriculum vitae, (3) PDFs of two publications, and (4) contact information for three references.

Rutgers University is an equal opportunity, affirmative action educator and employer. Applications from women and minorities are encouraged.