By Jason Stajich, on February 8th, 2010
An article in PLoS Pathogens by Morris et al describe a hypothesis about the evolution and origins of plant pathogens applying the parallel theories to the emergence of medically relevant pathogens. The authors highlight the importance of understanding the evolution of organisms in the context of emerging pathogens like Puccinia Ug99 for our ability [...]
By Jason Stajich, on December 9th, 2008
A new and improved annotation of Cryptococcus neoformans var grubii strain H99 (serotype A) has been made available in GenBank and the Broad Institute website. This update is collaboration between several groups providing data and analyses and the annotation team at Broad’s gene calling [...]
By Jason Stajich, on December 8th, 2008
A manuscript at Nature AOP details the success of the Dyer lab and collaborators in encouraging [[Aspergillus fumigatus]] to complete the sexual cycle under observable (e.g. laboratory) conditions. The authors are the teleomorph (sexual or perfect) stage [[Neosartorya fumigata]] for a fungus that had been previously only had an observed anamorphic stage. A. fumigatus can reproduce asexually forming structures called [[conidiophores]] which produce asexual spores called [[conidiospores]] (or mitospores as they are produced via mitosis) define the anamorph or imperfect stage, but no sexual structures such as [[cleistothecia]] that produce the packaged sexual products as [[ascospores]]. See a presentation by David Geiser (archived at the Aspergillus website) for more detail on some of the morphological and phylogenetic characters that unify the group of Eurotiales [...]
By Jason Stajich, on April 13th, 2008
Here’s a fungal infection you don’t hear much about. One of the fungi we work on, a model for mushroom development as it can be fruited in the lab is Coprinopsis cinerea (previously named Coprinus cinereus). C. cinerea is a saprobric coprophillic fungus so it is usually found on dung. Although rare in human infections there are a few reports in immunocopromised patients. [...]
By Jason Stajich, on February 17th, 2008
What delineates species boundaries in fungi? Much work has been done on biological and phylogenetic species concepts in fungi. Some concepts are reviewed in Taylor et al 2006 and in Taylor et al 2000, and applications can be seen in several pathogens such as Paraccocidiodies, Coccidioides, and the model filamentous (non-pathogenic) fungus
By Jason Stajich, on November 20th, 2007
While many strains of S. cerevisiae are being sequenced, a single strain, YJM789, isolated from the lung of an AIDS patient was sequenced a few years ago at Stanford and published this summer. The genome was described in a paper entitled “Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789″.
By Jason Stajich, on October 31st, 2007
By Jason Stajich, on September 29th, 2007
Ignazio Carbone and colleagues published a recent analysis of the evolution of the aflatoxin gene cluster in five Aspergillus fungi entitled “Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster” in BMC Evolutionary Biology. [...]
By Jason Stajich, on September 18th, 2007
A recent paper “Targeted gene deletion in Candida parapsilosis demonstrates the role of secreted lipase in virulence”, from the Nosanchuk lab at Yeshiva University, shows the role of secreted lipases in virulence of this pathogen. [...]