Tag Archives: france

Postdoc: Population genomics and speciation in fungal pathogens

Post-doc position in genomics of introgressions in fungal pathogens

[from EvolDir]

We invite applications for a postdoctoral position in the Research Institute of Horticulture and Seeds. The position is for 1 year starting as soon as January 2016.

The Postdoc will conduct his research in the field of population genomics of secondary contacts and introgression in two fungal pathogens: Venturia inaequalis, an ascomycete responsible of the apple scab, and the Scedosporium apiospermum species complex which is responsible for pulmonary infections in children with cystic fibrosis.

The Postdoc will have to identify genomics regions involved in introgression between divergent populations of Venturia inaequalis and Scedosporium species. Indeed, secondary contacts between divergent genomics pools may favour the creation of new genetic combination of loci involved in pathogenicity. New hybrids should then exhibit hitherto unseen epidemiological properties. The Postdoc will work in a team involved in several projects of genetics or genomics, functional genomics, and evolutionary epidemiology (IRHS – ECOFUN team).

Using resequenced genomes (89 for V. inaequalis and 23 for the Scedosporium species complex), the Postdoc will be in charge of the assembling, genome aligning and SNP calling, prior to population genomics analyses. The Postdoc will have to infer evolutionary histories at the interspecies and species levels for both datasets, identify and characterise genomic regions involved in introgressions. He [or she] will possibly collaborate with all the researchers involved in this project : population geneticists, microbiologists, functional genomicists, phytopathologists.

We are looking for a candidate with a keen interest for population genomics and evolutionary history in structured populations. The candidate must hold a PhD in population genomics with strong skills in bioinformatics (manipulation of NGS data, assembling, demographic inferences). Good written communication skill and ability to work as part of a team are required.

How to apply:
Applicants should submit

  1.  a cover letter describing their research interests and background,
  2.  a detailed CV (including list of publications), and
  3. the contact details of three references to bruno.lecam@angers.inra.fr or christophe.lemaire@univ-angers.fr. The cover letter should also include possible starting dates.

Job: Faculty Positions at Institute Pasteur


The Institut Pasteur in Paris announces an international call for outstanding candidates at all levels to establish independent research groups in the Mycology Department. Preference will be given to studies on human pathogenic filamentous fungi and yeasts, fungal cell biology or population genetics and genomics. Research on model species will be also considered when connecting to fungal pathogenesis. Attractive start-up and ongoing support includes salary, equipment, and operating costs. In addition, Institut Pasteur provides access to state-of-the-art technology platforms, and to laboratories and research infrastructure in disease-endemic regions through the Pasteur International Network. Further information on the Institute and on-campus facilities can be found at http://www.pasteur.fr. Further information on the Mycology Department can be found at http://www.pasteur.fr/mycology.

The application should comprise the following (in order) in a single pdf file: i) A brief introductory letter, ii) A Curriculum Vitae, a list of 10 selected publications and a full publication list, iii) A description of past and present research activities (up to 3 pages), iv) The proposed research project (up to 6 pages, including a summary).

Junior candidates [1] should also provide:
v) The names of 3 scientists from whom letters of recommendation can be sought, together with the names of scientists with a potential conflict of interest from whom evaluations should not be requested.

Applications and requests for information should be addressed to myco_call2015@pasteur.fr by February 27, 2015. Short-listed candidates will be invited for interviews in spring 2015 and decisions will be announced by summer 2015.

[1] Institut Pasteur is an equal opportunity employer. Junior group leaders should be less than 8 years after PhD at the time of submission. Women are eligible up to 11 years after their PhD if they have one child and up to 14 years after their PhD if they have two or more children.

Flier from the posting DeptMyco_call2015

Postdoc: Population Genomics of Cheese Fungi

Postdoc in Population Genomics of Cheese Fungi (Orsay, France)

We are seeking a highly motivated postgraduate researcher to work on population genomics of cheese Fungi in laboratory ESE located in Orsay near Paris (http://www.ese.u-psud.fr/index.php). The project focuses on studying the population genomics of *Penicillium roqueforti*, a fungus used for the maturation of blue cheese. Using whole-genome sequences of wild and domesticated populations, the successful applicant will particularly work on describing the recombination landscape within the genome of Penicillium roqueforti, the dynamics of transposable elements and horizontal gene transfers, and the selection within domesticated populations.

Applicants must have a PhD with emphasis on population genetics and genomics, molecular evolution. Experience in manipulating high throughput sequencing data and bioinformatics would be an advantage as well.

The successful applicant will be working in Evolutionary Ecology and
Genetics team with Antoine Branca and Tatiana Giraud. The team has a long research experience in population genetics of fungi.

Orsay is a small town located 30km south of Paris and at just 40 min by urban transportation from downtown Paris.

Review of applications begins immediately until the end of June 2014.
Starting dates are flexible but preferentially by September 2014. Salary will depend upon experience. To apply, please email to
antoine.branca@u-psud.fr: i) a cover letter summarizing research interests and expertise ii) a Curriculum Vitae (including publications), and iii) the names and contact information of at least two references.