Posted on September 5th, 2008 by Jason Stajich · 1 Comment
If you are interested in fungal genetics and genomics, comparative biology, and of course dancing with fungal geneticists, plan to attend the 25th Fungal Genetics Meeting held at the beautiful Asilomar Conference Grounds in Pacific Grove, California. Below is info sent out from the Policy Committee and registration opens in a little over a month. Budding (and conidiating) artists can also submit a Logo design
Click to continue reading "Attend Fungal Genetics 2009!"
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Categories: Fungal Genetics · news
Tags: asilomar, biology, comparative, conferences, FGSC, fungal, Fungal Genetics, genomes, meetings
Posted on August 18th, 2008 by Jason Stajich · No Comments
An outbreak of a fungal infection called "white-nose syndrome" is killing bats in the Northeastern US. This New Scientist article mentions the outbreak briefly and an NPR story and recent Boston Globe story also gives it some coverage.
Click to continue reading "Bats beware of white nose"
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Categories: extremophiles · news · pathogens
Tags: bat, caves, cryptococcus, fungal, fungi, fungus, infection, news, research, white-nose syndrome
Posted on August 6th, 2008 by Jason Stajich · No Comments
The first of several dermatophyte fungal genomes, [[Microsporum gypseum]], has been released at the Broad Dermatophyte site. Two Tricophyton species and another Microsporum genome should follow soon. These dermatophyte fungi are Onygenales (Ascomycota) fungi (like Coccidioides and Histoplasma).
Click to continue reading "Dermatophyte genome sequences"
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Categories: coccidioides · onygenales
Tags: coccidioides, fungal, fungi, genome, genome sequence, microsporum, onygenales, release, sequence, sequences, sequencing, trichophyton
Posted on July 27th, 2008 by Jason Stajich · 1 Comment
Report concludes that a fungal genome database is of "the highest priority".
This is the title as listed in PubMed for this article from Future Medicine about the AAM report on charting future needs and avenues of research on the fungal kingdom.
Click to continue reading "A word about databases"
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Categories: opinion
Tags: bioinformatics, bioinformatics support, comparative, curation, database, funding, fungal, fungal genome database, fungi, gene, genes, genome, genomes, gmod, maps, news, pathogen, pathogens, protein, pubmed, reporting, reports, research, sequences, sequencing, species, strain, systematics, transcription, transcripts
Posted on July 9th, 2008 by Jason Stajich · 2 Comments
The American Academy of Microbiology has released a report (PDF) on the Fungal Kingdom outlining importance of research in the kingdom and recommending several areas of priority for future areas of research.
Click to continue reading "AAM Releases “The Fungal Kingdom” Report"
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Categories: news · science policy
Tags: American Society for Microbiology, annotation, ASM, database, functional, fungal, genomes, news, reporting, reports, research, sequencing
Posted on June 5th, 2008 by Chris Villalta · No Comments
A year ago researchers at James Madison University discovered that, Pedobacter cryoconitis, a bacteria first found on the skin of red backed salamanders, was found to prevent the growth of the chytrid B. dendrobatidis, which is currently decimating frog populations.

Click to continue reading "Amphibian skin bacteria shown to fight off Batrachochytrium dendrobatidis."
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Categories: adaptation · chytridomycota · ecology · evolution · fungi
Tags: amphibians, antifungal, bacteria, batrachochytrium, chytrid, frog, fungal, fungus, news, pathogen
Posted on April 27th, 2008 by Jason Stajich · No Comments
A paper in Science from Jason Crawford and colleagues explores the function of polyketide synthetases (PKS) in the synthesis of the secondary metabolite and carcinogen aflatoxin. Previous work (nicely reviewed in the fungi by Nancy Keller and colleagues) has shown the the PKS genes have several domains. These domains include acyl carrier protein (ACP), transacylase (SAT), ketosynthase (KS), malonyl-CoA:ACP transacylase (MAT), “product template” PT, Aand thioesterase/Claisen cyclase (TE/CLC).
Click to continue reading "Deconstructing aflatoxin biosynthesis"
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Categories: PKS · aflatoxin · aspergillus
Tags: aflatoxin, aspergillus, biosynthesis, carcinogen, chemistry, enzymes, functional, fungal, fungi, pathogen, PKS, secondary metabolite
Posted on April 13th, 2008 by Jason Stajich · No Comments
A few of the summer meetings that relate to fungal biology and evolution.
- Genetics and Cell Biology of Basidiomycetes, May 28-June 1, Southeast Missouri State University, Cape Girardeau, MO. Registration deadline April 25.
- North American Pombe Meeting, June 6-8, Los Angeles, CA. Registration deadline May 14.
- Cellular & Molecular Fungal Biology Gordon Conference, June 29-July 4, The Holderness School, Holderness, NH. Registration deadline June 8 (if it doesn't fill up sooner).
- Yeast Genetics and Molecular
Click to continue reading "Summer 2008, Mycological Meetings"
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Categories: Mycological Society of America · conferences · news
Tags: biology, conferences, fungal, meetings, mycological, yeast
Posted on April 5th, 2008 by Jason Stajich · No Comments
Another asexual species of fungi also has evidence for the meiosis-specific process of Repeat Induced Point-mutations (RIP).
Click to continue reading "More RIP without sex?"
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Categories: RIP · neurospora · pezizomycota · sordariomycetes
Tags: asexual, aspergillus, batrachochytrium, biology, evolution, fungal, fungi, fungus, gene, genes, genome, genomes, hybrid, hybridization, pathogen, pathogens, podospora, recombination, repeats, RIP, sex, species, transposon
Posted on February 5th, 2008 by Jason Stajich · No Comments
Dettman, Anderson, and Kohn recently published a paper in BMC Evolutionary Biology on reproductive experimental evolution in two Neurospora crassa populations evolved under different selective conditions. This is a great study that complements work published last year in Nature on experimental evolution in Saccharomyces cerevisiae populations. Neurospora populations were evolved under high salt and low temperature and were started from either high diversity (interspecific crosses, N. crassa vs N. intermedia) or low diversity (intraspecific cross, two N. crassa isolates D143 (Louisiana, USA)and D69 (Ivory Coast)) as described in Figure 1. The experimentally evolved populations were then tested for asexual and sexual fitness (they were taken through complete meiotic cycle throughout the experiment to avoid insure there was selection on the sexual reproduction pathway.
Click to continue reading "Neurospora speciation through experimental evolution"
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Categories: adaptation · experimental evolution · neurospora · speciation
Tags: antagonistic epistasis, asexual, biology, cerevisiae, evolution, experimental, filamentous, fitness, fungal, fungi, fungus, hybrid, neurospora, phenotype, phylogenetics, saccharomyces, sequencing, speciation, species, strain