David Carter at the Sanger Centre emailed a message that new assemblies of Saccharomyces strain resequencing project have been posted including a new three-way alignment of S. bayanus-S.paradoxus-S.cerevisiae. This updates the Dec 2007 release.
New Saccharomyces resequencing assembly
Posted on February 21st, 2008 by Jason Stajich · No Comments
David Carter at the Sanger Centre emailed a message that new assemblies of Saccharomyces strain resequencing project have been posted including a new three-way alignment of S. bayanus-S.paradoxus-S.cerevisiae. This updates the Dec 2007 release.
Categories: SGRP · genome · genome sequencing · population genomics · resequencing · saccharomyces
More updates on Saccharomyces resequencing project at Sanger
Posted on December 19th, 2007 by Jason Stajich · 1 Comment
I've paraphrased an email sent by David Carter to folks interested in Saccharomyces resequencing project.
The latest version of the SGRP data is on the web site and ftp site. This release is somewhat provisional, and motivated more by the fact that we have a paper deadline coming up than by any claim to finality. It should be quite
Categories: population genomics · resequencing · saccharomyces
Yeast resequencing update
Posted on October 16th, 2007 by Jason Stajich · 1 Comment
Ed Louis at Nottingham sent out an email today outlining plans for publishing analyses of the Saccharomyces Genome Resequencing Project. They are in process of analyzing the data and ask that people respect their use of the data, but also invite collaborations and companion papers.
Categories: genome sequencing · news · resequencing · saccharomyces
Next gen sequencing technology
Posted on October 4th, 2007 by Jason Stajich · No Comments
Nature has an overview of what goes in and out of next generation sequencers with an interview with a smiling Chad Nusbaum from the Broad Institute. Most of these have been out and about for a while, but it seems that the hayride/bandwagon is starting to pick up more steam as GT's Genome Scan has several posts about sequencing referencing J. Craig V, George
Categories: genome sequencing · news · resequencing
Yeast resequencing data updated
Posted on March 15th, 2007 by Jason Stajich · 3 Comments
The Saccharomyces Genome Resequencing Project has completed " ABI sequencing of 32 S. cerevisiae strains and 27 S. paradoxus strains to a depth of between 1x and 3x". This is in collaboration with Ed Louis' group who have been working on number of really interesting fungal biology.
Categories: resequencing · saccharomyces