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Links and references for the currently available fungal genome sequences or proposed (and austensibly funded) fungal genomes.

Contents

Providers

Phylogenies

Fungi/Metazoa Early Branches

Ichthyosporea

Choanoflagellata

"Chytridomycota"

Chytridiomycotina

NHGRI listing

Neocallimastigomycota

Blastocladiomycotina

Monoblepharidiomycetes

"Zygomycota"

Mucormycotina

Kickxellomycotina

Entomophthoromycotina

Glomeromycota

Basidiomycota

Agaricomycetes

Agaricales

Boletales

Corticiales

Gloeophyllales

Hymenochaetales

Russulales

Polyporales

Tremellomycetes

Tremella messenterica

Ustilaginomycotina

  • Ustilago maydis 521 - FGI [13].
  • Malassezia globosa CBS 7966 NCBI Taxonomy; 7X shotgun sequencing; [14].
  • Malassezia restricta CBS 7877 NCBI Taxonomy; 1X shotgun sequencing; [14].

Pucciniomycotina

(Rusts also known as Urediniomycetes)

Archiascomycota (Taphrinomycotina)

Euascomycota (Pezizomycotina)

Eurotiomycota

  • Phylogeny [16]

Eurotiales

Onygenales

Coccidioides

Populations: A=Arizona, CC=Central California, SCNM=Southern California/Northern Mexico, SCM=Southern/Central Mexico, TSA=Texas, South America.

Strain Population Seq Coverage
RS [24] CC Finishing (20X+ ?)
H538.4 CC 3X
RMSCC 2394 SCNM 8X
RMSCC 3703 SCNM 3X
Strain Population Seq Coverage
C735 TIGR/JCVI [24] A (?) 10X+
Silveira A 5X
RMSCC 3488 TSA 8X
RMSCC 2133 TSA 8X
RMSCC 3700 TSA 3X
RMSCC 1037 A 3X
RMSCC 1038 SCM 3X
RMSCC 1040 A 3X
CPA 0001 A 3X
CPA 0020 A 3X
CPA 0066 A 3X
Strain Population Seq Coverage Link
WU24 NAm I 7X FGI
217B NAm II 12.5X WUSTL
G186AR Latin American clade 10X: 4X Broad, 6X WUSTL WUSTL FGI
H143 African clade 4X FGI
H88 Africa 8X FGI

Sordariomycetes

Hypocreomycetidae

Sordariales

Sordariomycetes incertae sedis

Ophiostomatales

Leotiomycetes

Dothideomycetes

Lecanoromycetes

Orbiliomycetes

Pezizomycetes

Hemiascomycota (Saccharomycotina)

See several papers describing the taxonomy and phylogenetic relationships of these species [30, 31, 32, 33]. (There are many more genomes being produced in individual labs, several 454-based studies are ongoing in many groups so this is really a snapshot of some published genomes, but there are many more on the way. You are invited or welcomed to add a link to a project if there is a publicly available website indicating at least the project information if not an available sequence).


Candida clade

This clade contains the medically relevant C. albicans and the xylose fermenter Pichia stipis. More description of the Candida clade.


Kluyveromyces clade

(paraphyletic - see [40])

Saccharomyces senso-lato

Saccharomyces seno-stricto

Other links

References

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